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We Build Software Solutions for Genomics Labs

We solve software problems, so you can focus on the science.

Professional Services

As an Illumina partner, Semaphore specializes in BaseSpace Clarity LIMS implementations.

  • Workflow Design and Configuration
  • EMR System Integrations
  • EPP Script Development
  • Instrument and Robotics Integrations 

Let our team solve your laboratory challenges.

Contact a BaseSpace ClarityLIMS Expert

Custom Solutions

We build custom laboratory information system (LIS) solutions that support your laboratory workflow. 

  • Order and Result Portals
  • HIPAA Compliant Databases
  • Panel Selection Websites
  • Project Management Dashboards

Talk to us about a solution built to your requirements.

Contact a Solutions Specialist

With staff in North America and Europe, we are available to augment your team with a single BaseSpace Clarity LIMS expert, or provide a full team to complete and maintain your implementation.

Our clients trust us to deliver the
most optimal mapping of laboratory processes.

Clarity Workflow Design
We offer a specialization in NGS workflow design, and advise our clients on the optimal mapping of laboratory processes into Clarity LIMS workflows. Our team designs and builds solutions to optimize your lab’s resources.
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Clarity Workflow Implementation
Our software professionals have implemented a wide variety of BaseSpace Clarity LIMS customizations. Diagnostic laboratories are complex, and we know how to manage that complexity. We are skilled in workflow configuration, EPP script development, instrument and robotics integrations, and EMR system integrations.
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Clarity Toolkit
Our custom Semaphore Clarity Toolkit includes the Semaphore LIMS Wrapper Library and Automated Workflow Testing Tools. The Library encapsulates common Clarity LIMS customization operations and gives our team the unique ability to efficiently implement software solutions to your laboratory workflow. We have developed tools that enable the rapid development of automated workflow tests. The Semaphore Clarity Toolkit is continuously updated to improve its usability and reliability.
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Clarity Support
Semaphore maintains ongoing support relationships with most of our clients. Our staff is available to answer questions or handle critical IT issues as they occur. Additionally, we can help train your staff on using and maintaining the customizations we provide.
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Clarity Workflow Design

We offer a specialization in NGS workflow design, and advise our clients on the optimal mapping of laboratory processes into Clarity LIMS workflows. Our team designs and builds solutions to optimize your lab’s resources. 

Clarity Workflow Implementation

Our software professionals implement a wide variety of extensions from accessioning to analysis pipeline integration.. Our team understands that each lab has a unique and complex set of requirements. We are skilled in configuration support, EPP script development, instrument integrations, robotics integrations, and EMR system integrations.

Clarity Toolkit

Our custom Semaphore Clarity Toolkit includes the Semaphore LIMS Wrapper Library and Automated Workflow Testing tools. The Library encapsulates common Clarity LIMS customization operations and gives our team the unique ability to efficiently implement software solutions to your laboratory workflow. We have developed tools that enable the rapid development of automated workflow tests. We frequently update the Semaphore Clarity Toolkit to improve its usability and reliability.

Clarity Support

Semaphore values each client and we are available to answer questions or handle critical IT issues as they occur. We provide training, workflow guidance and IT processes for your staff.

Extending LIMS Solutions

No matter your laboratory’s goals, we solve software problems,
so you can focus on the science.

Order and Resulting Integration
We integrate Clarity LIMS with order and results systems, laboratory information systems (LIS), requisition provisioning, Enterprise Resource Planning (ERP), Customer Relationship Management (CRM), project management or custom portals. No matter your workflow, we make it happen.

Analysis Pipeline Integration
We support your analysis pipeline solution. Our software professionals provide efficient solutions for ensuring your sequencing data securely enters your analysis platform of choice.

Software Engineering Services
We understand that laboratory software needs change over time. Let us support your team with a single developer or full team.

Electronic Medical Record (EMR) Systems Integrations
Whether using EPIC, Cerner or another EMR system, we efficiently integrate BaseSpace Clarity LIMS with your EMR via HL7.

Instrument Integrations
We extend and automate existing instrument integrations and build ones that are not currently available out of the box.

Business Solutions
We build custom solutions that support business process related to the laboratory workflow including Order and Result Portals, HIPAA Compliant Databases, Panel Selection Websites, Project Management Dashboards. Talk to us about how we efficiently build solutions that match your requirements. 


We deliver software services to support our clients’ growth.

Software Development, DevOps, Quality Assurance, Architecture User, and Interface/User Experience.

We offer additional services in Project Management, Business Analysis and Process Consultation. We are available to augment a software team with a single expert, or provide a full team to complete and maintain feature or project.

Semaphore is trusted by these incredible partners

“Semaphore provides software expertise for Helix’s Clarity LIMS implementation. They have provided excellent project management, technical leadership, and quality software development that was crucial to the successful launch of our high volume lab. It's exciting to work with such an attentive and collaborative team, especially during complex design and implementations."


Tony Le, Product Manager

Helix


Let’s start the conversation

We strive to provide our clients with the full value of BaseSpace Clarity LIMS, and we support many clients ranging from Next Generation Sequencing (NGS) workflow design, to quality assurance services.

1 (844) 744-3577 ext 1

200-844 Courtney St.

Victoria, BC V8W 1C4